Bioinformatics
2026Senior Author
Transformative Applications and Innovations in Next-Generation Sequencing Data Analysis
Beura, Abhijit, Dakal, Tikam Chand, Rajguru, Mangesh Sudhakar, Manjunath, Gowrang K, Mahalingam, Shweta, Kumar, Abhishek
Genomics
2026Senior Author
Transcriptional and Pathway Level Heterogeneity in Luminal A Breast Cancer: A Framework for Precision Therapy
Manjunath, Gowrang Kasaba, Nashier, Disha, Kumar, Abhishek
Ethics
2026Senior Author
Ethics, Privacy and Biological Data: Challenges, Risks and Governance in the Era of Genomics and Personalized Medicine
Dakal, Tikam Chand, Beura, Abhijit, Kumar, Abhishek
Genomics
2026Senior Author
Decoding the Mutational Hierarchy of Thyroid Cancer and Associated Signaling Pathways
Nashier, Disha, Manjunath, Gowrang Kasaba, Parveen, Alisha, Malik, Sumira, Mitra, Tamoghna, Goswami, Chandan, Neerathilingam, Muniasamy, Watts, Ankit, Kumar, Abhishek
Genomics
2026First Author
Deciphering secondary metabolite potentials of halophilic marine-derived Aspergillus ruber
Kumar, Abhishek, Parveen, Alisha, Hansen, Frederik Teilfeldt, Sørensen, Jens Laurids, Bandapalli, Obul Reddy, Neerathilingam, Muniasamy, Prasad, Kumar Suranjit
Genomics
2026Senior Author
An integrative mutational and network analysis of pancreatic cancer reveals key genes, and signalling pathways
Manjunath, Gowrang Kasaba, Kanchi, Lasya Priya, Dakal, Tikam Chand, Beura, Abhijit, Kumar, Abhishek
AI
2025Senior Author
Structural prediction of potent non-coding RNAs
Beura, Abhijit, Manjunath, Gowrang Kasaba, Dakal, Tikam Chand, Kumar, Abhishek
Genomics
2025Senior Author
Role of RGD-binding Integrins in ovarian cancer progression, metastasis and response to therapy
Ranga, Vipin, Dakal, Tikam Chand, Maurya, Pawan Kumar, Johnson, Mark S, Sharma, Narendra Kumar, Kumar, Abhishek
Bioinformatics
2025Senior Author
Next generation DNA Sequencing data analysis and its application in clinical genomics
Beura, Abhijit, Manjunath, Gowrang K, Mahalingam, Shweta, Rajguru, Mangesh Sudhakar, Dakal, Tikam Chand, Kumar, Abhishek
AI
2025First Author
Microbiome Based Precision Medicine through Integrated Multiomics and Machine Learning
Kumar, Abhishek, Xu, Caiming, Dakal, Tikam Chand
Genomics
2025Senior Author
Genetic and Epigenetic Regulation of Non-coding RNAs: Implications in Cancer Metastasis, Stemness and Drug Resistance
Dakal, Tikam Chand, Philip, Reya Rene, Bhushan, Ravi, Sonar, Priyanka Vijay, Rajagopal, Senthilkumar, Kumar, Abhishek
Genomics
2025Senior Author
GTF2I acts as a novel tumor suppressor transcription factor and shows Favorable prognosis in renal cancer
Dakal, Tikam Chand, Thakur, Mony, George, Nancy, Singh, Tiratha Raj, Yadav, Vinod, Kumar, Abhishek
Bioinformatics
2025Senior Author
From sample to clinical insight: a review of exome sequencing in disease diagnostics
Manjunath, Gowrang Kasaba, Verma, Rohit Kumar, Berua, Abhijit, Mahalingam, Shweta, Dakal, Tikam Chand, Kumar, Abhishek
Genomics
2025Senior Author
Classification and Applications of Bio‐nanomaterials
Dakal, Tikam Chand, Bhushan, Ravi, Dhakar, Ramgopal, Kumar, Abhishek
Genomics
2025Senior Author
Applications of Nanotechnology and Nanomaterials in Gas Industry
Dakal, Tikam Chand, Dhakar, Ramgopal, Bhushan, Ravi, Kumar, Abhishek
AI
2025Senior Author
Advanced Computational Tools, Artificial Intelligence and Machine-learning Approaches in Gut Microbiota and Biomarker Identification
Dakal, Tikam C, Xu, Caiming, Kumar, Abhishek
Genomics
2024Senior Author
Unraveling the Genetic and Singaling Landscapes of Pediatric Cancer
Manjunath, Gowrang Kasaba, Ankam, Krishna Veni, Dakal, Tikam Chand, Sharma, MV Srihari, Nashier, Disha, Mitra, Tamoghna, Kumar, Abhishek
Genomics
2024Senior Author
Unconventional localization of PAI-1 in PML bodies: A possible link with cellular growth of endothelial cells
Gehlot, Pragya, Brünnert, Daniela, Kaushik, Vibha, Yadav, Arpana, Bage, Saloni, Gaur, Kritika, Saini, Mahesh, Ehrhardt, Jens, Manjunath, Gowrang Kasaba, Kumar, Abhishek
Genomics
2024Senior Author
Transcriptomic study reveals alteration in the expression of long non-coding RNAs (lncRNAs) during reversal of HIV-1 latency in monocytic cell line
Rai, Ankita, Singh, Aradhana, Gaur, Ritu, Bhagchandani, Tannu, Verma, Anjali, Nikita, Kushwaha, Hemant Ritturaj, Malik, Rupali, Dandu, Himanshu, Kumar, Abhishek
Bioinformatics
2024Senior Author
Semi-Supervised Learning in Bioinformatics
Parveen, Alisha, Dakal, Tikam Chand, Yadav, Pankaj, Kumar, Abhishek
Genomics
2024Senior Author
Proteogenomics: Methods and Protocols
Allmer, Jens, Kumar, Abhishek
AI
2024First Author
Proteogenomics for Non-model Ocean-Derived Fungi
Kumar, Abhishek
Genomics
2024Senior Author
Proteogenomics
Allmer, Jens, Kumar, Abhishek
AI
2024Senior Author
Predictive and Prognostic Relevance of Tumor-Infiltrating Immune Cells: Tailoring Personalized Treatments against Different Cancer Types
Dakal, Tikam Chand, George, Nancy, Xu, Caiming, Suravajhala, Prashanth, Kumar, Abhishek
Bioinformatics
2024Senior Author
Introduction to Integrated Proteogenomic Pipeline for Dealing with Pathogenic Missense SNPs
Parveen, Alisha, Kumar, Abhishek
Bioinformatics
2024Senior Author
Identification of diagnostic biomarkers and pathways
Gowrang, KM, Dakal, Tikam Chand, Kumar, Abhishek
Genomics
2024Senior Author
Identification of Diagnostic Biomarkers and Pathways
Manjunath, Gowrang Kasaba, Dakal, Tikam Chand, Kumar, Abhishek
Bioinformatics
2024Senior Author
Identification and Extraction of Biomarker Information
Amala, K, Dakal, Tikam Chand, Beura, Abhijeet, Kumar, Abhishek
Genomics
2024First Author
Genome Annotation
Kumar, Abhishek
Genomics
2024Senior Author
Emerging Methods and Techniques for Cancer Biomarker Discovery
Dakal, Tikam Chand, Dhakar, Ramgopal, Beura, Abhijit, Moar, Kareena, Maurya, Pawan Kumar, Sharma, Narendra Kumar, Ranga, Vipin, Kumar, Abhishek
Bioinformatics
2024Senior Author
Disease Biomarker Discovery
Dakal, Tikam Chand, Parveen, Alisha, Kumar, Abhishek
Genomics
2024Senior Author
Disease Biomarker Discovery
Dakal, Tikam Chand, Parveen, Alisha, Kumar, Abhishek
Bioinformatics
2024Senior Author
Cancer Epigenetics and Bioinformatics
Dakal, Tikam Chand, Beura, Abhijit, Kaur, Amandeep, Gogoi, Bhaskar, Sengupta, Abhishek, Suravajhala, Prashanth, Kumar, Abhishek
Genomics
2024Senior Author
Breast Cancer Genomic Analyses Reveal Genes, Mutations, and Signaling Networks
Manjunath, Gowrang, Sharma, Srishar, Nashier, Disha, Vasanthaiah, Shruthi, Jha, Spriha: Bage, Saloni, Mitra, Tamoghna, Goyal, Pankaj, Neerathilingam, Muniaswamy, Kumar, Abhishek
Genomics
2024Senior Author
Biomarker Discovery via N-Glycoproteomics
Kumar, Rajesh, Kumar, Abhishek
Genomics
2022Senior Author
Germline variants of CYBA and TRPM4 predispose to familial colorectal cancer
Zhu, Lizhen, Miao, Beiping, Dymerska, Dagmara, Kuswik, Magdalena, Bueno-Martínez, Elena, Sanoguera-Miralles, Lara, Velasco, Eladio A, Paramasivam, Nagarajan, Schlesner, Matthias, Kumar, Abhishek
AI
2022Senior Author
Computational methods for predicting mature microRNAs
Yousef, Malik, Parveen, Alisha, Kumar, Abhishek
Genomics
2021First Author
A rare large duplication of MLH1 identified in Lynch syndrome
Kumar, Abhishek, Paramasivam, Nagarajan, Bandapalli, Obul Reddy, Schlesner, Matthias, Chen, Tianhui, Sijmons, Rolf, Dymerska, Dagmara, Golebiewska, Katarzyna, Kuswik, Magdalena, Lubinski, Jan
Genomics
2020Senior Author
Mutational hotspots of HSP47 and its potential role in cancer and bone-disorders
Parveen, Alisha, Kumar, Rajesh, Tandon, Ravi, Khurana, Sukant, Goswami, Chandan, Kumar, Abhishek
Genomics
2020First Author
Characterization of Nucleocapsid (N) Protein from Novel Coronavirus SARS-CoV-2
Kumar, Abhishek, Parveen, Alisha, Kumar, Narendra, Bairy, Sneha, Kaushik, Vibha, Chandola, Chetan, Sharma, Jyoti, Sharma, Phulwanti, Agarwal, Akhil, Pandey, Akhilesh
Bioinformatics
2019Senior Author
Overview of Genomic Tools for Circular Visualization in the Next generation Genomic Sequencing Era
Parveen, Alisha, Khurana, Sukant, Kumar, Abhishek
Genomics
2019Senior Author
Collagen-specific chaperone, heat shock protein 47 kDa (HSP47)-pathway and expression patterns in cancer
Parveen, Alisha, Kumar, Rajesh, Khurana, Sukant, Kumar, Abhishek
AI
2019Senior Author
Applications of Machine Learning in miRNA Discovery and Target Prediction
Parveen, Alisha, Mustafa, Syed, Yadav, Pankaj, Kumar, Abhishek
Genomics
2018Senior Author
Spliceosomal proteins encoded by fungal genomes.
Sarde, Sandeep J, Kempken, Frank, Kumar, Abhishek
Genomics
2018First Author
ShRNA-mediated knock-down of CXCL8 inhibits tumor growth in colorectal liver metastasis
Kumar, Abhishek, Cherukumilli, Madhuri, Mahmoudpour, Seyed Hamidreza, Brand, Karsten, Bandapalli, Obul Reddy
Bioinformatics
2018Senior Author
Overview of Genomic Tools for Circular Visualization in next-Generation Genomic Sequencing Era
Parveen, Alisha, Khurana, Sukank, Kumar, Abhishek
Genomics
2018Senior Author
Mutational Hotspots and Protein Interactome Analyses of Collagen-Specific Chaperone—HSP47
Parveen, Alisha, Kumar, Rajesh, Tandon, Ravi, Khurana, Sukant, Goswami, Chandan, Kumar, Abhishek
Bioinformatics
2018First Author
Genome Sequencing and analyses of Two Marine Fungi from the North Sea Unraveled a Plethora of Novel Biosynthetic Gene Clusters
Kumar, Abhishek, Sørensen, Jens Laurids, Hansen, Frederik Teilfeldt, Arvas, Mikko, Syed, Muhammad Fahad, Hassan, Lara, Benz, J Philipp, Record, Eric, Henrissat, Bernard, Pöggeler, Stefanie
Bioinformatics
2018First Author
Familial Cancer Variant Prioritization Pipeline version 2 (FCVPPv2) applied to a papillary thyroid cancer family
Kumar, Abhishek, Bandapalli, Obul Reddy, Paramasivam, Nagarajan, Giangiobbe, Sara, Diquigiovanni, Chiara, Bonora, Elena, Eils, Roland, Schlesner, Matthias, Hemminki, Kari, Försti, Asta
Bioinformatics
2018First Author
A Necessary and Timely Upgrade of Python for Bioinformatics, as Second Edition
Kumar, Abhishek
Genomics
2017First Author
Genomic Data Mining Unraveled Potential Biocompass in Fruit Flies Using and Current Status of Magneto genetics
Kumar, Abhishek
Genomics
2017First Author
Ancestry & molecular evolutionary analyses of heat shock protein 47 kDa (HSP47/SERPINH1)
Kumar, Abhishek, Bhandari, Anita, Sarde, Sandeep J, Goswami, Chandan
Genomics
2016First Author
Data on the evolutionary history of the V (D) J recombination-activating protein 1–RAG1 coupled with sequence and variant analyses
Kumar, Abhishek, Bhandari, Anita, Sarde, Sandeep J, Muppavarapu, Sekhar, Tandon, Ravi
Genomics
2015First Author
Understanding V (D) J recombination initiator RAG1 gene using molecular phylogenetic and genetic variant analyses and upgrading missense and non-coding variants of clinical importance
Kumar, Abhishek, Bhandari, Anita, Sarde, Sandeep J, Muppavarapu, Sekhar, Tandon, Ravi
Genomics
2015First Author
Sequence and structural perspectives of bacterial β-stranded porins
Kumar, Abhishek, Bhandari, Anita, Krishnaswamy, Sankaran
Genomics
2015Senior Author
Expression of temperature-sensitive ion channel TRPM8 in sperm cells correlates with vertebrate evolution
Majhi, Rakesh Kumar, Saha, Somdatta, Kumar, Ashutosh, Ghosh, Arijit, Swain, Nirlipta, Goswami, Luna, Mohapatra, Pratyush, Maity, Apratim, Sahoo, Vivek Kumar, Kumar, Abhishek
Genomics
2015First Author
De novo assembly and genome analyses of the marine-derived Scopulariopsis brevicaulis strain LF580 unravels life-style traits and anticancerous scopularide biosynthetic gene cluster
Kumar, Abhishek, Henrissat, Bernard, Arvas, Mikko, Syed, Muhammad Fahad, Thieme, Nils, Benz, J Philipp, Sørensen, Jens Laurids, Record, Eric, Poeggeler, Stefanie, Kempken, Frank
Genomics
2015First Author
Bayesian phylogeny analysis of vertebrate serpins illustrates evolutionary conservation of the intron and indels based six groups classification system from lampreys for ∼500 MY
Kumar, Abhishek
Genomics
2014First Author
Surveying genetic variants and molecular phylogeny of cerebral cavernous malformation gene, CCM3/PDCD10
Kumar, Abhishek, Bhandari, Anita, Goswami, Chandan
Bioinformatics
2014First Author
Sequencing, de novo assembly and annotation of the Colorado potato beetle, Leptinotarsa decemlineata, transcriptome
Kumar, Abhishek, Congiu, Leonardo, Lindström, Leena, Piiroinen, Saija, Vidotto, Michele, Grapputo, Alessandro
Genomics
2014First Author
Revising angiotensinogen from phylogenetic and genetic variants perspectives
Kumar, Abhishek, Sarde, Sandeep J, Bhandari, Anita
Genomics
2014First Author
Revising angiotensinogen from phylogenetic and genetic variants
Kumar, Abhishek, Sarde, Sandeep J, Bhandari, Anita
Genomics
2014Senior Author
Quantitative proteomics of the regulation patterns in scopularide A and B production by a marine Scopulariopsis brevicaulis strain LF580
Kramer, Annemarie, Beck, Hans Christian, Kumar, Abhishek
Genomics
2014First Author
Next-generation genome and transcriptome based methods for the exploration of secondary metabolites from marine fungi for the treatment of cancer
Kumar, Abhishek, Kempken, Frank
Genomics
2014First Author
Molecular phylogeny of C1 inhibitor depicts two immunoglobulin-like domains fusion in fishes and ray-finned fishes specific intron insertion after separation from zebrafish
Kumar, Abhishek, Bhandari, Anita, Sarde, Sandeep J, Goswami, Chandan
Bioinformatics
2014First Author
Genetics: A Computational Approach, 5th Edition by Benjamin A. Pierce
Kumar, Abhishek
Genomics
2014First Author
Genetic variants and evolutionary analyses of heparin cofactor II
Kumar, Abhishek, Bhandari, Anita, Sarde, Sandeep J, Goswami, Chandan
Genomics
2013First Author
Sequence, phylogenetic and variant analyses of antithrombin III
Kumar, Abhishek, Bhandari, Anita, Sarde, Sandeep J, Goswami, Chandan
Bioinformatics
2013First Author
Genome sequencing, assembly and annotation of three marine fungal isolates using different next generation DNA sequencing methods for pharmaceutically important secondary metabolites
Kumar, Abhishek, Kempken, Frank
Bioinformatics
2013First Author
Genome sequencing, assembly and annotation of a marine fungal isolate of Scopulariopsis brevicaulis using three different next generation sequencing technologies
Kumar, Abhishek, Kempken, Frank
Bioinformatics
2013First Author
Genome sequencing, assembly and annotation of a marine fungal isolate of Pestalotiopsis using next generation sequencing technologies
Kumar, Abhishek, Kempken, Frank
Bioinformatics
2013First Author
Genome sequencing, assembly and annotation of a marine fungal isolate of Calcarisporium using different next generation sequencing technologies
Kumar, Abhishek, Kempken, Frank
Genomics
2013First Author
Characterization of bud emergence 46 (BEM46) protein: sequence, structural, phylogenetic and subcellular localization analyses
Kumar, Abhishek, Kollath-Leiß, Krisztina, Kempken, Frank
Bioinformatics
2012First Author
The draft genome of marine isolate of Scopulariopsis brevicaulis using three different next generation sequencing methods
Kumar, Abhishek
Genomics
2012First Author
Structural Analysis of Outer Membrane Beta-stranded Porins using Temperature Factor
Kumar, Abhishek, Krishnaswamy, Sankaran
Bioinformatics
2012First Author
Next-generation genome sequencing, assembly, annotation and analysis of a marine isolate of Scopulariopsis brevicaulis
Kumar, Abhishek
Genomics
2012First Author
Molecular phylogeny of OVOL genes illustrates a conserved C2H2 zinc finger domain coupled by hypervariable unstructured regions
Kumar, Abhishek, Bhandari, Anita, Sinha, Rahul, Sardar, Puspendu, Sushma, Miss, Goyal, Pankaj, Goswami, Chandan, Grapputo, Alessandro
Bioinformatics
2012First Author
Marine fungal isolates: genome sequence analysis using different next generation DNA sequencing methods to find potential cancer drugs
Kumar, Abhishek
Bioinformatics
2012First Author
Genome sequencing, assembly and annotation of a marine fungal isolate of biotechnological interest (Scopulariopsis brevicaulis) using three different next generation sequencing technologies
Kumar, Abhishek, Kempken, Frank
Bioinformatics
2012First Author
Genome sequencing of three marine fungi: genome characterisation for secondary metabolite catalogues, kinomes and transposons using next-generation genome sequencing
Kumar, Abhishek, Kempken, Frank
Bioinformatics
2012First Author
Genome sequence analysis of three marine fungal isolates using different next generation DNA sequencing methods
Kumar, Abhishek, Kempken, Frank
Bioinformatics
2012First Author
Genome and RNA sequencing, assembly and annotation of three marine fungal isolates using different next generation DNA sequencing methods for pharmaceutically important secondary metabolites
Kumar, Abhishek
Genomics
2011First Author
Spliceosomal intron insertions in genome compacted ray-finned fishes as evident from phylogeny of MC receptors, also supported by a few other GPCRs
Kumar, Abhishek, Bhandari, Anita, Sinha, Rahul, Goyal, Pankaj, Grapputo, Alessandro
Genomics
2010First Author
Phylogenomics of vertebrate serpins
Kumar, Abhishek
Genomics
2009First Author
Structural analysis of outer membrane beta-stranded porins using B-factor
Kumar, Abhishek, Krishnaswamy, S
Genomics
2009First Author
Delving into vertebrate serpins for understanding their evolution
Kumar, Abhishek
Genomics
2008Senior Author
Temperature factor analysis of outer membrane β-stranded porin crystal structures suggests the pore is not uniformly rigid
Krishnaswamy, S, Kumar, Abhishek
Genomics
2008First Author
Ancestry and evolution of a secretory pathway serpin
Kumar, Abhishek, Ragg, Hermann
Genomics
First Author
Urochordate serpins are Classified into Six Groups Encoded by Exon-Intron Structures, Microsynteny and Bayesian Phylogenetic Analyses
Kumar, Abhishek, Bhandari, Anita
Genomics
First Author
A Germline Mutation in the POT1 Gene Is a Candidate for Familial Non-Medullary Thyroid Cancer
Kumar, Abhishek, Paramasivam, Nagarajan, Bonora, Elena, Hemminki, Kari